Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885515.1_cds_XP_016439535.1_35082
CDS Infomation

[gene=LOC107765410] [db_xref=GeneID:107765410] [protein=katanin p60 ATPase-containing subunit A-like 2] [partial=5'] [protein_id=XP_016439535.1] [location=complement(join(229637..229750,229845..229949,230666..230725,230827..230965,231049..231233,231350..231433,231541..231663,232649..232828,233148..233217,233316..233409,233633..233708,234791..234880,234958..235059,235375..235446,236176..236349,236459..236529,236630..>236813))] [gbkey=CDS]
Sequence

TGTTTAAAGTTATCTATCTTTGTCCGGATTACTAGGGGCCCAGCTTTTGGGACTCGAGGG
AAGGTTGTGTTGCCTTTTGAAGATAATCCATCATCAAAAATTGGTGTAAAGTTCGATAAG
CCTATATCAGACGGGGTTAACCTTGGGGGTCTTTGTGATGAAGGTCATGGATTCTTTTGC
AAAGCCAGTGATTTGCGCTTGGAAGCCACAGGTGTTGATGATCTGGACAAGTTACTCATA
AGCACATTGTTTGAGGTTGTATTCAACGAAAGCAGAAATTCCCCCTTCATTTTATTTATG
AAAGATGCTGAGAAATCTATGGCAGGAAGTTCAGAATCATATTCAACTTTCAAAAGTCGG
CTTGAAAAGCTTCCTGCTAATATCGTTGTTATAGGATCTCATGCTCATACAGATAACCGT
AAGGAAAAGTCACATCCTGGGGGATTGCTCTTCACCAAATTTGGCAGCAATCAAACTGCC
TTGCTCGATTTGGCTTTCCCGGATAGTTTTGGGAAGTTGCATGACAGGGGGAAGGAAGTG
ACCAAGACAACTAAACTTCTGACGAAGCTTTTCCCCAACAAAGTGACCATTCACATGCCA
CAGGATGAAGCGCTTTTATCTGCTTGGAAGCAACAGTTGGATCGAGATGCTGATACCCTA
AAAATGAAAGGAAATTTGAATAGCTTGCGAACAGTTCTTAATCGGAATGGATTGGACTGT
GATGGACTTGACACTTTGTGCATTAAAGACCAGACTTTTTCTGTTGAAAGTGCGGAGAAG
GTGGTTGGATGGGCCTTGAGCCATCATTTGATGCAGAACCTTGATGCAGATCCTGACGTT
AGGCTTGTTTTGTCTCCTGTGAGCATTCAGTATGGGTTGGAAATTCTACAAGCTATGCAA
AATGAAAGCAAAAGCTTGAAGAAGTCACTTAAGGATATTGTGACGGAGAATGAATTTGAG
AAGAGACTTCTAGCAGATGTTATTCCCCCCAGTGATATTGGAGTAACATTTGATGATATT
GGTGCACTTGAAAATGTCAAGGATACATTAAAAGAGCTGGTCATGCTTCCTTTACAAAGA
CCTGAACTTTTCTGCAAGGGTCAACTAACCAAGCCATGCAAGGGAATCCTCTTATTTGGA
CCACCTGGAACAGGGAAAACCATGCTCGCGAAAGCTGTTGCGACTGAAGCGGGTGCAAAC
TTTATCAATATTTCGATGTCAAGTATCACTTCAAAGTGGTTTGGCGAGGGCGAGAAATAT
GTGAAAGCTGTCTTCTCCCTGGCTAGTAAAATTGCTCCAAGTGTTGTCTTTGTTGATGAA
GTTGATAGCATGCTTGGACGACGGGAAAATCCAGGAGAACATGAGGCCATGCGTAAAATG
AAAAATGAATTCATGGTGAATTGGGATGGTTTACGCACAAAAGATACTGAGCGTGTGTTG
GTACTTGCAGCAACAAACAGACCATATGACCTTGATGAGGCTGTCATAAGGAGACTGCCG
CGTAGGCTGATGGTCAATTTACCAGATGCTCCAAATAGAGCGAAAATTCTAAAAGTGATA
CTTGCAAAAGAAGACTTGGCTCCAGATGTTGGTCTGGATGCTGTGGCAAGTTTAACCGAT
GGATATTCCGGAAGTGACCTTAAGAATCTGTGTGTTACAGCTGCATATCGACCAATTAGG
GAAATCCTAGAAAAAGAAAAAAAGGAACATGATGCAGCTTTGGCAGAAGGTAGACCTACG
CCAACACCATGCGGCAGTACAGACATTCGGCCTTTGAATATGGACGACTTTAAAAATGCT
CATGAGCGGGTATGTGCAAGTGTTTCATCAGAATCCATAAATATGACGGAGCTTCTTCAG
TGGAATGAACTGTATGGAGAAGGGGGCTCTAGAAGAAAGAAGTCGTTGAGTTATTTCATG
TAA

Peptide Sequence

PEP ID

XP_016439535.1
PEP Infomation

PREDICTED: katanin p60 ATPase-containing subunit A-like 2, partial [Nicotiana tabacum]
Sequence

CLKLSIFVRITRGPAFGTRGKVVLPFEDNPSSKIGVKFDKPISDGVNLGGLCDEGHGFFC
KASDLRLEATGVDDLDKLLISTLFEVVFNESRNSPFILFMKDAEKSMAGSSESYSTFKSR
LEKLPANIVVIGSHAHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGKLHDRGKEV
TKTTKLLTKLFPNKVTIHMPQDEALLSAWKQQLDRDADTLKMKGNLNSLRTVLNRNGLDC
DGLDTLCIKDQTFSVESAEKVVGWALSHHLMQNLDADPDVRLVLSPVSIQYGLEILQAMQ
NESKSLKKSLKDIVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQR
PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY
VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVL
VLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLAPDVGLDAVASLTD
GYSGSDLKNLCVTAAYRPIREILEKEKKEHDAALAEGRPTPTPCGSTDIRPLNMDDFKNA
HERVCASVSSESINMTELLQWNELYGEGGSRRKKSLSYFM

Transcript Sequence

Gene sequence data has not been registered.